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Preparation of Total Protein Extracts |
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Total
protein extracts were prepared from dry mature seeds, and from seeds
at different stages of germination. Following grinding of seeds using
mortar and pestle (150 mg representing approximately 8 400 wild type
seeds) in liquid nitrogen, total proteins were extracted at 2°C
in 2.2 ml of thiourea/urea lysis buffer (Harder et al., 1999) containing
7 M urea (Amersham Pharmacia Biotech, Orsay, France), 2 M thiourea
(Merck, Lyon, France), 4% (w/v) 3-[(3-cholamidopropryl)dimethylammonio]-1-propanesulfonate
(CHAPS) (Amersham Pharmacia Biotech, Orsay, France), and 1% (v/v)
Pharmalyte pH 3-10 carrier ampholytes (Amersham Pharmacia Biotech,
Orsay, France). This extraction buffer also contained 18 mM Tris-HCl
(Trizma HCl; Sigma, St Quentin Fallavier, France), 14 mM Trizma base
(Sigma, St Quentin Fallavier, France), the protease inhibitor cocktail
“complete Mini” from Roche Diagnostics GmbH (Mannheim,
Germany), 53 U/ml DNase I (Roche Diagnostics GmbH, Mannheim, Germany),
4.9 Kunitz U/ml RNase A (Sigma, St Quentin Fallavier, France), and
0.2% (v/v) Triton X-100. After 10 min at 4°C, 14 mM dithiothreitol
(DTT) (Amersham Pharmacia Biotech, Orsay, France) was added and the
protein extracts were stirred for 20 min at 4°C, then centrifuged
(35000 g, 10 min) at 4°C. The supernatant was submitted to a second
clarifying centrifugation as above. The final supernatant corresponded
to the total protein extract. Protein concentrations in the various
extracts were measured according to Bradford (1976). Bovine serum
albumin was used as a standard. |